Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs113949348 chr1:227444048 A/G 0 404 14.27 14.23 1.48 KM Plot
STAD rs11422030 chr17:51219838 G/GA 3.37E-7 404 3.57 20 14.07 KM Plot
STAD rs114263100 chr1:227445204 A/G 0 404 14.27 14.23 1.48 KM Plot
STAD rs11435712 chr8:95490849 T/TA 2.63E-5 401 14.22 19.1 7.65 KM Plot
STAD rs114672114 chr6:34480065 A/G 3.75E-5 394 14.25 12.77 3.5 KM Plot
STAD rs115998028 chr4:53668106 T/G 2.48E-6 400 14.07 18.4 6.17 KM Plot
STAD rs11650727 chr17:29020928 G/T 1.45E-5 403 14.07 16.67 9.8 KM Plot
STAD rs11653259 chr17:29012817 T/C 1.39E-5 399 14.23 16.02 9.8 KM Plot
STAD rs11655661 chr17:55187654 C/T 3.56E-7 402 14.23 15.43 5.97 KM Plot
STAD rs11655876 chr17:29017150 G/A 1.28E-5 404 14.22 16.53 9.8 KM Plot
STAD rs1170880 chr1:196947314 C/T 6.91E-6 406 5.28 16.37 14.2 KM Plot
STAD rs1170881 chr1:196949271 G/A 7.06E-6 404 14.2 16.37 5.28 KM Plot
STAD rs1170882 chr1:196949323 C/G 5.96E-6 405 14.2 16.52 5.28 KM Plot
STAD rs1170883 chr1:196951471 C/T 1.46E-5 405 14.07 17.05 5.28 KM Plot
STAD rs11717752 chr3:128386144 T/C 2.26E-6 405 7.27 14.6 14.55 KM Plot